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The institute has eleven departments, ten of them with an average of 80 students admitted annually into each.

Radio Engineering and Cybernetics

General and Applied Physics

Aerophysics and Space Research

Molecular and Biological Physics

Physical and Quantum Electronics

Aeromechanics and Flight Engineering

Applied Mathematics and Control

Problems of Physics and Power Engineering

Innovation and High Technology

Nano-, Bio-, Information and Cognitive Technologies

The eleventh faculty, Information Business Systems, offers only a Master's programme and accepts students with Bachelor's degrees from other faculties or other institutes.